STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2235MdsD protein, putative; Degrades oligopeptides; Belongs to the peptidase S41B family. (1092 aa)    
Predicted Functional Partners:
SRU_2765
X-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.
  
     0.649
SRU_2649
Prolyl oligopeptidase family protein, putative; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.
  
     0.613
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.605
SRU_0381
Identified by match to protein family HMM PF00450.
  
     0.555
SRU_2034
Acyl-peptide hydrolase, putative; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.
  
     0.503
SRU_2720
Probable acylaminoacyl-peptidase, putative; Identified by match to protein family HMM PF00326.
  
     0.492
SRU_2236
HAD superfamily (subfamily IA) hydrolase, TIGR01548; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01548; match to protein family HMM TIGR01549.
       0.468
SRU_1999
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.464
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.458
SRU_1821
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.456
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.