STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2239Sulfate transporter; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815. (592 aa)    
Predicted Functional Partners:
SRU_2404
Conserved hypothetical protein; Identified by match to protein family HMM PF00023.
    
 
 0.872
nuoM
NADH dehydrogenase i, m subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
  
 
 0.779
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.712
sbcD
Nuclease SbcCD, D subunit subfamily, putative; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.702
SRU_2007
Identified by match to protein family HMM PF00149.
   
   0.702
SRU_2238
Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
       0.527
SRU_1695
NADH dehydrogenase, putative; Identified by match to protein family HMM PF00361; match to protein family HMM PF00499; match to protein family HMM PF00662.
  
  
 0.526
SRU_0584
Transporter, sodium/sulfate symporter family; Identified by match to protein family HMM PF02080.
  
  
 0.506
SRU_0317
Putative filamentous hemagglutinin; Identified by match to protein family HMM PF07992.
 
    0.443
cysC
Sulfate adenylyltransferase, large subunit subfamily, putative; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.437
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.