STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2284ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (613 aa)    
Predicted Functional Partners:
SRU_2523
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  0.643
SRU_0999
ATP-binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
 
  
0.640
SRU_1409
Probable toxin secretion ABC transporter ATP-binding protein, putative; Identified by match to protein family HMM PF00005.
 
 
  
0.635
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.605
SRU_1908
Cell division protein, putative; Identified by match to protein family HMM PF00004.
   
 0.503
SRU_0311
NosF protein; Identified by match to protein family HMM PF00005.
  
 
0.469
SRU_2042
MoeZ/MoeB domain family; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237.
  
 0.468
SRU_0294
ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.
 
     0.465
SRU_0752
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
0.448
dnaJ
dnaJ protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.
  
 
 
 0.447
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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