Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SRU_0029 | SRU_2040 | SRU_0029 | SRU_2040 | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Identified by match to protein family HMM PF01398. | 0.696 |
| SRU_0029 | SRU_2289 | SRU_0029 | SRU_2289 | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | 0.847 |
| SRU_0029 | rpoA | SRU_0029 | SRU_1060 | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
| SRU_0029 | rpoB | SRU_0029 | SRU_1758 | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
| SRU_0029 | rpoC | SRU_0029 | SRU_1757 | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.990 |
| SRU_1098 | SRU_1102 | SRU_1098 | SRU_1102 | Putative type i restriction enzyme hindviip m protein; Identified by match to protein family HMM PF02384. | HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. | 0.996 |
| SRU_1098 | SRU_2289 | SRU_1098 | SRU_2289 | Putative type i restriction enzyme hindviip m protein; Identified by match to protein family HMM PF02384. | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | 0.470 |
| SRU_1102 | SRU_1098 | SRU_1102 | SRU_1098 | HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. | Putative type i restriction enzyme hindviip m protein; Identified by match to protein family HMM PF02384. | 0.996 |
| SRU_1102 | SRU_2289 | SRU_1102 | SRU_2289 | HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | 0.506 |
| SRU_2040 | SRU_0029 | SRU_2040 | SRU_0029 | Identified by match to protein family HMM PF01398. | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.696 |
| SRU_2040 | SRU_2289 | SRU_2040 | SRU_2289 | Identified by match to protein family HMM PF01398. | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | 0.481 |
| SRU_2040 | rpoA | SRU_2040 | SRU_1060 | Identified by match to protein family HMM PF01398. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.691 |
| SRU_2040 | rpoB | SRU_2040 | SRU_1758 | Identified by match to protein family HMM PF01398. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.729 |
| SRU_2288 | SRU_2289 | SRU_2288 | SRU_2289 | Hypothetical protein; Identified by Glimmer2; putative. | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | 0.714 |
| SRU_2288 | SRU_2290 | SRU_2288 | SRU_2290 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.714 |
| SRU_2289 | SRU_0029 | SRU_2289 | SRU_0029 | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.847 |
| SRU_2289 | SRU_1098 | SRU_2289 | SRU_1098 | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | Putative type i restriction enzyme hindviip m protein; Identified by match to protein family HMM PF02384. | 0.470 |
| SRU_2289 | SRU_1102 | SRU_2289 | SRU_1102 | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. | 0.506 |
| SRU_2289 | SRU_2040 | SRU_2289 | SRU_2040 | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | Identified by match to protein family HMM PF01398. | 0.481 |
| SRU_2289 | SRU_2288 | SRU_2289 | SRU_2288 | Putative helicase; Identified by match to protein family HMM PF00271; match to protein family HMM PF01844; match to protein family HMM PF04851. | Hypothetical protein; Identified by Glimmer2; putative. | 0.714 |
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