STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2313Ferric enterobactin receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (902 aa)    
Predicted Functional Partners:
SRU_1919
Conserved hypothetical protein.
  
     0.601
SRU_2161
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.513
SRU_0537
Peptidase.
  
     0.511
SRU_1921
Conserved hypothetical protein.
  
     0.497
SRU_1549
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain; Identified by match to protein family HMM PF00246.
  
     0.485
SRU_2243
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain, putative; Identified by match to protein family HMM PF00246.
  
     0.475
SRU_0852
Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domain, putative; Identified by match to protein family HMM PF00246.
  
     0.472
SRU_2842
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
 
   0.454
SRU_0572
Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.
  
     0.453
SRU_2648
Conserved secreted Zn-dependent enzyme from deacylase/carboxypeptidase superfamily, putative; Identified by match to protein family HMM PF00246.
  
     0.426
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.