SRU_2337 protein (Salinibacter ruber) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

SRU_2337

Identified by match to protein family HMM TIGR02436. (128 aa)

Predicted Functional Partners:

SRU_0474

0.768

SRU_1288

0.767

radC

0.594

SRU_2339

0.548

SRU_1958

0.439

rho-2

0.427

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0474	SRU_1288	SRU_0474	SRU_1288	Conserved hypothetical protein.	S23 ribosomal protein; Identified by match to protein family HMM PF05635.	0.775
SRU_0474	SRU_2337	SRU_0474	SRU_2337	Conserved hypothetical protein.	Identified by match to protein family HMM TIGR02436.	0.768
SRU_1288	SRU_0474	SRU_1288	SRU_0474	S23 ribosomal protein; Identified by match to protein family HMM PF05635.	Conserved hypothetical protein.	0.775
SRU_1288	SRU_2337	SRU_1288	SRU_2337	S23 ribosomal protein; Identified by match to protein family HMM PF05635.	Identified by match to protein family HMM TIGR02436.	0.767
SRU_1958	SRU_2337	SRU_1958	SRU_2337	Identified by match to protein family HMM PF00300.	Identified by match to protein family HMM TIGR02436.	0.439
SRU_2337	SRU_0474	SRU_2337	SRU_0474	Identified by match to protein family HMM TIGR02436.	Conserved hypothetical protein.	0.768
SRU_2337	SRU_1288	SRU_2337	SRU_1288	Identified by match to protein family HMM TIGR02436.	S23 ribosomal protein; Identified by match to protein family HMM PF05635.	0.767
SRU_2337	SRU_1958	SRU_2337	SRU_1958	Identified by match to protein family HMM TIGR02436.	Identified by match to protein family HMM PF00300.	0.439
SRU_2337	SRU_2339	SRU_2337	SRU_2339	Identified by match to protein family HMM TIGR02436.	Hypothetical protein; Identified by Glimmer2; putative.	0.548
SRU_2337	radC	SRU_2337	SRU_2338	Identified by match to protein family HMM TIGR02436.	DNA repair protein RadC; Identified by match to protein family HMM PF00633; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	0.594
SRU_2337	rho-2	SRU_2337	SRU_2340	Identified by match to protein family HMM TIGR02436.	Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.427
SRU_2339	SRU_2337	SRU_2339	SRU_2337	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM TIGR02436.	0.548
SRU_2339	radC	SRU_2339	SRU_2338	Hypothetical protein; Identified by Glimmer2; putative.	DNA repair protein RadC; Identified by match to protein family HMM PF00633; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	0.709
SRU_2339	rho-2	SRU_2339	SRU_2340	Hypothetical protein; Identified by Glimmer2; putative.	Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.586
radC	SRU_2337	SRU_2338	SRU_2337	DNA repair protein RadC; Identified by match to protein family HMM PF00633; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	Identified by match to protein family HMM TIGR02436.	0.594
radC	SRU_2339	SRU_2338	SRU_2339	DNA repair protein RadC; Identified by match to protein family HMM PF00633; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	Hypothetical protein; Identified by Glimmer2; putative.	0.709
radC	rho-2	SRU_2338	SRU_2340	DNA repair protein RadC; Identified by match to protein family HMM PF00633; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.540
rho-2	SRU_2337	SRU_2340	SRU_2337	Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	Identified by match to protein family HMM TIGR02436.	0.427
rho-2	SRU_2339	SRU_2340	SRU_2339	Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	Hypothetical protein; Identified by Glimmer2; putative.	0.586
rho-2	radC	SRU_2340	SRU_2338	Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	DNA repair protein RadC; Identified by match to protein family HMM PF00633; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	0.540