SRU_2396 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

SRU_2396

Conserved hypothetical protein. (246 aa)

Predicted Functional Partners:

SRU_0693

0.779

SRU_1895

0.677

SRU_1360

0.625

cheB

0.502

SRU_0678

0.460

SRU_0104

0.445

SRU_0291

0.443

SRU_1374

0.401

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0104	SRU_0291	SRU_0104	SRU_0291	LysM domain protein; Identified by match to protein family HMM PF01476.	Peptidoglycan N-acetylmuramoylhydrolase; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.	0.516
SRU_0104	SRU_2396	SRU_0104	SRU_2396	LysM domain protein; Identified by match to protein family HMM PF01476.	Conserved hypothetical protein.	0.445
SRU_0291	SRU_0104	SRU_0291	SRU_0104	Peptidoglycan N-acetylmuramoylhydrolase; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.516
SRU_0291	SRU_2396	SRU_0291	SRU_2396	Peptidoglycan N-acetylmuramoylhydrolase; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.	Conserved hypothetical protein.	0.443
SRU_0678	SRU_2396	SRU_0678	SRU_2396	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Conserved hypothetical protein.	0.460
SRU_0678	cheB	SRU_0678	SRU_0336	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.620
SRU_0693	SRU_2396	SRU_0693	SRU_2396	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.779
SRU_1360	SRU_2396	SRU_1360	SRU_2396	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.625
SRU_1374	SRU_2396	SRU_1374	SRU_2396	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.401
SRU_1895	SRU_2396	SRU_1895	SRU_2396	Conserved hypothetical protein.	Conserved hypothetical protein.	0.677
SRU_2396	SRU_0104	SRU_2396	SRU_0104	Conserved hypothetical protein.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.445
SRU_2396	SRU_0291	SRU_2396	SRU_0291	Conserved hypothetical protein.	Peptidoglycan N-acetylmuramoylhydrolase; Identified by match to protein family HMM PF01464; match to protein family HMM PF01476.	0.443
SRU_2396	SRU_0678	SRU_2396	SRU_0678	Conserved hypothetical protein.	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.460
SRU_2396	SRU_0693	SRU_2396	SRU_0693	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.779
SRU_2396	SRU_1360	SRU_2396	SRU_1360	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.625
SRU_2396	SRU_1374	SRU_2396	SRU_1374	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.401
SRU_2396	SRU_1895	SRU_2396	SRU_1895	Conserved hypothetical protein.	Conserved hypothetical protein.	0.677
SRU_2396	cheB	SRU_2396	SRU_0336	Conserved hypothetical protein.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.502
cheB	SRU_0678	SRU_0336	SRU_0678	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	Sensor protein fixL; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.	0.620
cheB	SRU_2396	SRU_0336	SRU_2396	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	Conserved hypothetical protein.	0.502