STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2403Aldo/keto reductase; Identified by match to protein family HMM PF00248. (393 aa)    
Predicted Functional Partners:
SRU_2404
Conserved hypothetical protein; Identified by match to protein family HMM PF00023.
   
 0.823
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
       0.631
SRU_1267
Aldehyde reductase; Identified by match to protein family HMM PF00248.
 
 
0.616
SRU_2402
Glycosyl transferase; Identified by match to protein family HMM PF00534.
       0.472
oxyR
Redox-sensitive transcriptional activator OxyR; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.431
SRU_0860
Conserved hypothetical protein.
    
   0.418
SRU_2431
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein; Identified by match to protein family HMM PF00160; match to protein family HMM PF02985; match to protein family HMM PF03130.
   
   0.401
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.