STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2411Acetoin utilization protein, putative; Identified by match to protein family HMM PF00571. (235 aa)    
Predicted Functional Partners:
SRU_0020
Phosphosulfolactate synthase; Identified by match to protein family HMM PF02679.
  
     0.560
hflX
GTPase of unknown function subfamily, putative; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
    0.560
SRU_1527
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.542
SRU_0495
Conserved hypothetical protein; Identified by match to protein family HMM PF02622; Belongs to the UPF0301 (AlgH) family.
  
     0.518
SRU_0103
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.
  
 
 
 0.500
SRU_2410
Hypothetical protein; Identified by Glimmer2; putative.
       0.491
cat5
Cationic amino acid transporter; Identified by similarity to PIR:F84279; match to protein family HMM PF00324; match to protein family HMM PF02080.
  
  
 0.452
SRU_1123
Cystathionine beta-synthase; Identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137.
     
 0.431
SRU_1728
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.405
SRU_1706
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.402
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.