STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2440Daunorubicin C-13 ketoreductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370. (310 aa)    
Predicted Functional Partners:
SRU_2795
Putative oxidoreductase; Identified by match to protein family HMM PF00106.
  
    0.611
fabD
Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.
 
 
 0.553
SRU_1214
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
     0.528
SRU_0992
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.518
SRU_0880
NAD-binding domain 4, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF07993; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.498
SRU_0268
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.496
fabF
3-oxoacyl-(acyl-carrier-protein) synthase II; Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.482
fdx
Ferredoxin; Identified by match to protein family HMM PF00111.
   
 
 0.462
SRU_0874
Haloalkane dehalogenase; Identified by match to protein family HMM PF00561.
  
   0.435
SRU_2778
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
  
    0.430
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.