Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
proV-2Choline transporter; Identified by match to protein family HMM PF00005. (226 aa)    
Predicted Functional Partners:
SRU_0598
ABC transporter, multidrug efflux family; Identified by match to protein family HMM PF00005.
 
  
0.909
SRU_2851
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
 
    0.901
ybjZ
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.
 
 
    0.901
SRU_1224
Hemin ABC transporter, permease protein, putative; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.820
SRU_2729
Hemin ABC transporter, permease protein, putative; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.820
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
      0.763
SRU_0294
ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005.
  
     0.742
SRU_2479
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.694
SRU_0868
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
  
 
 0.672
fecB
ABC-type Fe3+-siderophores transport systems; Identified by match to protein family HMM PF01497.
  
 
 0.672
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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