STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2453Putative membrane protein; Identified by match to protein family HMM PF07681. (168 aa)    
Predicted Functional Partners:
crcB
crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.652
proV-2
Choline transporter; Identified by match to protein family HMM PF00005.
       0.620
SRU_1216
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.507
SRU_0064
Biotin synthesis protein, putative.
  
     0.505
SRU_1908
Cell division protein, putative; Identified by match to protein family HMM PF00004.
  
  
  0.484
SRU_2451
Conserved hypothetical protein TIGR00245; Identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245.
       0.474
SRU_2455
ISSru3, transposase insA; Identified by match to protein family HMM TIGR01199.
       0.466
SRU_2456
ISSru3, transposase insB; Identified by match to protein family HMM PF03400.
       0.466
SRU_2450
Alkaline phosphatase, putative; Identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409; Belongs to the alkaline phosphatase family.
       0.450
SRU_2251
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
     0.404
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.