STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2458Low molecular weight phosphotyrosine protein phosphatase; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (137 aa)    
Predicted Functional Partners:
SRU_2460
Identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832.
 
  
 0.935
SRU_2457
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SRU_0326
Metallo-beta-lactamase superfamily protein; Identified by match to protein family HMM PF00581; match to protein family HMM PF00753.
  
 
 0.753
ArsM
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF01135; match to protein family HMM PF01209; match to protein family HMM PF02353.
      0.678
SRU_2459
Hypothetical protein; Identified by Glimmer2; putative.
       0.674
SRU_2462
Bacterial regulatory proteins, ArsR family; Identified by match to protein family HMM PF01022.
  
  
 0.513
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.471
SRU_1311
General stress protein.
  
 
 0.457
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
    
 0.457
SRU_1321
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.437
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.