STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2467BNR repeat, putative. (399 aa)    
Predicted Functional Partners:
SRU_2391
Bacterial Ig-like domain (group 2) family; Identified by match to protein family HMM PF02368.
  
     0.659
SRU_2390
Conserved hypothetical protein.
  
 
   0.657
SRU_2025
TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
    
   0.648
SRU_0100
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.621
SRU_2468
Ste20-like kinase Don3, putative.
       0.596
SRU_2469
Conserved hypothetical protein.
       0.596
SRU_2203
GDSL-like lipase/acylhydrolase domain protein; Identified by match to protein family HMM PF00657.
  
   0.540
SRU_0696
Putative permease domain protein; Identified by match to protein family HMM PF02687.
  
    0.486
SRU_0795
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.485
SRU_0768
Esterase/lipase, putative.
  
     0.474
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.