STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2473ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005. (251 aa)    
Predicted Functional Partners:
SRU_2474
Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 0.999
ybjZ
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.
 
      0.898
SRU_2851
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
      0.896
cysS
cysteinyl-tRNA synthetase; Identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.
     0.421
SRU_2470
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
SRU_2471
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
SRU_0432
Glycine betaine/L-proline transport system permease protein proW; Identified by match to protein family HMM PF00528.
 
  
 0.406
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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