STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2480Hypothetical protein; Identified by Glimmer2; putative. (453 aa)    
Predicted Functional Partners:
SRU_2479
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.866
SRU_2477
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.833
SRU_1981
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
SRU_2478
Hypothetical protein; Identified by Glimmer2; putative.
 
    
0.580
SRU_1327
Conserved hypothetical protein.
  
     0.491
SRU_1345
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.462
SRU_2476
Hypothetical protein; Identified by Glimmer2; putative.
 
    
0.458
SRU_0426
DoxX subfamily, putative; Identified by match to protein family HMM PF07681.
  
     0.456
SRU_2481
Transcriptional regulator, AbrB family; Identified by match to protein family HMM PF02517.
       0.449
SRU_1810
Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992.
  
     0.430
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.