STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2497N-acetylmuramoyl-L-alanine amidase-like protein; Identified by match to protein family HMM PF01520. (428 aa)    
Predicted Functional Partners:
SRU_0372
beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF00144; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM TIGR01409; Belongs to the glycosyl hydrolase 3 family.
    
 0.712
SRU_1569
Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.
    
   0.712
SRU_1601
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.673
SRU_0520
Putative integral membrane protein; Identified by match to protein family HMM PF01694.
  
   0.648
SRU_0683
Peptidase, S54 (rhomboid) family, putative; Identified by match to protein family HMM PF01694.
  
   0.648
SRU_0684
Cytoplasmic membrane protein; Identified by match to protein family HMM PF01694.
  
   0.648
SRU_1602
M23 peptidase domain protein; Identified by match to protein family HMM PF01551.
 
  
 0.621
SRU_2496
Hypothetical protein; Identified by Glimmer2; putative.
       0.615
SRU_0908
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
  
 0.578
SRU_0104
LysM domain protein; Identified by match to protein family HMM PF01476.
 
  
 0.572
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.