SRU_2529 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SRU_2529

GMC oxidoreductase family; Identified by match to protein family HMM PF00732. (577 aa)

Predicted Functional Partners:

SRU_2528

0.951

SRU_2404

0.909

SRU_2531

0.863

SRU_0324

0.860

SRU_2104

0.778

SRU_2533

0.773

SRU_2535

0.773

SRU_2530

0.748

SRU_2534

0.743

SRU_2097

0.708

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SRU_0324	SRU_2097	Identified by match to protein family HMM PF00034.	Caa(3)-type oxidase, subunit IV subfamily, putative; Identified by match to protein family HMM TIGR02229.	0.723
SRU_0324	SRU_2529	Identified by match to protein family HMM PF00034.	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	0.860
SRU_2097	SRU_0324	Caa(3)-type oxidase, subunit IV subfamily, putative; Identified by match to protein family HMM TIGR02229.	Identified by match to protein family HMM PF00034.	0.723
SRU_2097	SRU_2104	Caa(3)-type oxidase, subunit IV subfamily, putative; Identified by match to protein family HMM TIGR02229.	Conserved hypothetical protein.	0.930
SRU_2097	SRU_2529	Caa(3)-type oxidase, subunit IV subfamily, putative; Identified by match to protein family HMM TIGR02229.	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	0.708
SRU_2104	SRU_2097	Conserved hypothetical protein.	Caa(3)-type oxidase, subunit IV subfamily, putative; Identified by match to protein family HMM TIGR02229.	0.930
SRU_2104	SRU_2529	Conserved hypothetical protein.	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	0.778
SRU_2404	SRU_2529	Conserved hypothetical protein; Identified by match to protein family HMM PF00023.	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	0.909
SRU_2528	SRU_2529	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	0.951
SRU_2528	SRU_2530	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Glucosamine-6-phosphate isomerase, putative; Identified by match to protein family HMM PF01182; match to protein family HMM PF02585; match to protein family HMM TIGR00502.	0.732
SRU_2528	SRU_2531	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Identified by match to protein family HMM PF01261; match to protein family HMM TIGR01409.	0.865
SRU_2528	SRU_2533	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Probable secreted glycosyl hydrolase; Identified by match to protein family HMM PF06439.	0.770
SRU_2528	SRU_2534	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Probable oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM TIGR01409.	0.718
SRU_2528	SRU_2535	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Conserved hypothetical protein.	0.769
SRU_2529	SRU_0324	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	Identified by match to protein family HMM PF00034.	0.860
SRU_2529	SRU_2097	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	Caa(3)-type oxidase, subunit IV subfamily, putative; Identified by match to protein family HMM TIGR02229.	0.708
SRU_2529	SRU_2104	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	Conserved hypothetical protein.	0.778
SRU_2529	SRU_2404	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	Conserved hypothetical protein; Identified by match to protein family HMM PF00023.	0.909
SRU_2529	SRU_2528	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	0.951
SRU_2529	SRU_2530	GMC oxidoreductase family; Identified by match to protein family HMM PF00732.	Glucosamine-6-phosphate isomerase, putative; Identified by match to protein family HMM PF01182; match to protein family HMM PF02585; match to protein family HMM TIGR00502.	0.748