STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2536Identified by match to protein family HMM PF01261; match to protein family HMM PF07582. (334 aa)    
Predicted Functional Partners:
SRU_2532
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.930
SRU_2534
Probable oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM TIGR01409.
 
  
 0.920
SRU_2535
Conserved hypothetical protein.
 
  
 0.858
SRU_2533
Probable secreted glycosyl hydrolase; Identified by match to protein family HMM PF06439.
 
     0.757
gfo
Glucose-fructose oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM TIGR01409.
 
  
 0.626
SRU_0347
Oxidoreductase family, NAD-binding Rossmann fold domain protein; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447.
 
  
 0.625
SRU_0760
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.588
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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