SRU_2540 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SRU_2540

Conserved hypothetical protein. (344 aa)

Predicted Functional Partners:

SRU_0246

0.764

SRU_2025

0.666

cirA

0.638

SRU_1892

0.593

SRU_1921

0.565

SRU_0130

0.556

SRU_2448

0.519

SRU_0572

0.508

bfeA

0.507

SRU_1919

0.453

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_0130	SRU_2025	SRU_0130	SRU_2025	GumN protein; Identified by match to protein family HMM PF07446.	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	0.464
SRU_0130	SRU_2540	SRU_0130	SRU_2540	GumN protein; Identified by match to protein family HMM PF07446.	Conserved hypothetical protein.	0.556
SRU_0130	cirA	SRU_0130	SRU_0352	GumN protein; Identified by match to protein family HMM PF07446.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	0.440
SRU_0246	SRU_1892	SRU_0246	SRU_1892	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.562
SRU_0246	SRU_2448	SRU_0246	SRU_2448	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.	0.472
SRU_0246	SRU_2540	SRU_0246	SRU_2540	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.764
SRU_0572	SRU_1919	SRU_0572	SRU_1919	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	Conserved hypothetical protein.	0.403
SRU_0572	SRU_2025	SRU_0572	SRU_2025	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	0.602
SRU_0572	SRU_2448	SRU_0572	SRU_2448	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.	0.545
SRU_0572	SRU_2540	SRU_0572	SRU_2540	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	Conserved hypothetical protein.	0.508
SRU_0572	bfeA	SRU_0572	SRU_2415	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	Ferric enterobactin receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.	0.553
SRU_0572	cirA	SRU_0572	SRU_0352	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	0.597
SRU_1892	SRU_0246	SRU_1892	SRU_0246	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.562
SRU_1892	SRU_2540	SRU_1892	SRU_2540	Conserved hypothetical protein.	Conserved hypothetical protein.	0.593
SRU_1919	SRU_0572	SRU_1919	SRU_0572	Conserved hypothetical protein.	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	0.403
SRU_1919	SRU_2025	SRU_1919	SRU_2025	Conserved hypothetical protein.	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	0.416
SRU_1919	SRU_2540	SRU_1919	SRU_2540	Conserved hypothetical protein.	Conserved hypothetical protein.	0.453
SRU_1921	SRU_2540	SRU_1921	SRU_2540	Conserved hypothetical protein.	Conserved hypothetical protein.	0.565
SRU_2025	SRU_0130	SRU_2025	SRU_0130	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	GumN protein; Identified by match to protein family HMM PF07446.	0.464
SRU_2025	SRU_0572	SRU_2025	SRU_0572	TonB-dependent receptor, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.	Dipeptidyl peptidase IV (DPP IV); Identified by match to protein family HMM PF00326; match to protein family HMM PF00930.	0.602