STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2553Hypothetical protein; Identified by Glimmer2; putative. (2597 aa)    
Predicted Functional Partners:
SRU_1207
Conserved hypothetical protein.
  
 
 0.939
SRU_1728
Hypothetical protein; Identified by Glimmer2; putative.
  
 
   0.929
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.864
SRU_1995
Putative DNA polymerase II; Identified by match to protein family HMM PF00136; match to protein family HMM PF03104; match to protein family HMM TIGR01445.
   
 0.834
SRU_1028
Tetratricopeptide repeat family; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
 
 0.818
SRU_1532
Conserved hypothetical protein.
  
     0.775
SRU_1845
Outer membrane protein OmpH, putative.
  
     0.770
SRU_2418
Response regulator; Identified by match to protein family HMM PF00072.
  
   
 0.768
SRU_0789
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.764
SRU_0507
Conserved hypothetical protein.
  
     0.749
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.