STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2572Hypothetical protein; Identified by Glimmer2; putative. (338 aa)    
Predicted Functional Partners:
SRU_2573
Protein of unknown function family; Identified by match to protein family HMM PF01882.
 
    0.894
SRU_2566
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.848
SRU_2565
batD protein, putative.
 
    0.845
SRU_2570
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
   
 0.777
SRU_2569
Putative batB protein; Identified by match to protein family HMM PF00092.
 
     0.759
SRU_1676
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.652
SRU_2574
Sensor histidine kinase with a PAS domain; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
       0.651
cobB
Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.
       0.547
SRU_2736
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.533
SRU_0168
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.529
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.