SRU_2593 protein (Salinibacter ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SRU_2593

Probable chemotaxis protein; Identified by match to protein family HMM PF00691. (241 aa)

Predicted Functional Partners:

motA

0.998

SRU_2237

0.972

fliM

0.952

SRU_2697

0.926

fliL

0.908

fliG

0.905

flgK

0.904

SRU_2590

0.900

cheB

0.881

flgC

0.878

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRU_2237	SRU_2590	SRU_2237	SRU_2590	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	0.606
SRU_2237	SRU_2593	SRU_2237	SRU_2593	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Probable chemotaxis protein; Identified by match to protein family HMM PF00691.	0.972
SRU_2237	SRU_2697	SRU_2237	SRU_2697	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Identified by match to protein family HMM PF00691.	0.925
SRU_2237	cheB	SRU_2237	SRU_0336	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.881
SRU_2237	flgC	SRU_2237	SRU_2620	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR01395.	0.726
SRU_2237	flgK	SRU_2237	SRU_2637	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR02492.	0.767
SRU_2237	fliG	SRU_2237	SRU_2616	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.	0.678
SRU_2237	fliL	SRU_2237	SRU_2592	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.611
SRU_2237	fliM	SRU_2237	SRU_2591	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.	0.647
SRU_2237	motA	SRU_2237	SRU_2594	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	Chemotaxis motA protein; Identified by match to protein family HMM PF01618.	0.991
SRU_2590	SRU_2237	SRU_2590	SRU_2237	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	OmpA domain protein, putative; Identified by match to protein family HMM PF00691.	0.606
SRU_2590	SRU_2593	SRU_2590	SRU_2593	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Probable chemotaxis protein; Identified by match to protein family HMM PF00691.	0.900
SRU_2590	SRU_2697	SRU_2590	SRU_2697	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Identified by match to protein family HMM PF00691.	0.666
SRU_2590	cheB	SRU_2590	SRU_0336	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Protein-glutamate methylesterase CheB; Identified by match to protein family HMM PF00989; match to protein family HMM PF01339; match to protein family HMM PF01739; match to protein family HMM PF02518; match to protein family HMM PF03705; match to protein family HMM TIGR00229.	0.989
SRU_2590	flgC	SRU_2590	SRU_2620	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR01395.	0.994
SRU_2590	flgK	SRU_2590	SRU_2637	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF06429; match to protein family HMM TIGR02492.	0.993
SRU_2590	fliG	SRU_2590	SRU_2616	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.	0.999
SRU_2590	fliL	SRU_2590	SRU_2592	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.972
SRU_2590	fliM	SRU_2590	SRU_2591	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.	0.999
SRU_2590	motA	SRU_2590	SRU_2594	Possible flagellar motor switch FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	Chemotaxis motA protein; Identified by match to protein family HMM PF01618.	0.978