STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2665Hypothetical protein; Identified by Glimmer2; putative. (594 aa)    
Predicted Functional Partners:
SRU_2664
CDP-alcohol phosphatidyltransferase family; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
   
 0.910
SRU_1509
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
     0.752
SRU_1508
Conserved hypothetical protein.
 
     0.604
SRU_1393
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.474
SRU_2662
Hypothetical protein; Identified by Glimmer2; putative.
       0.430
SRU_2663
Tetratricopeptide repeat family; Identified by match to protein family HMM PF07721.
       0.430
SRU_2666
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   
 0.423
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.