STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2732Identified by match to protein family HMM PF05171. (355 aa)    
Predicted Functional Partners:
hmuV
Hemin ABC transporter, ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
 0.995
SRU_2728
Hemin-binding periplasmic protein hmut precursor; Identified by match to protein family HMM PF01497; similar to agr_c_4467p.
 
  
 0.976
SRU_2729
Hemin ABC transporter, permease protein, putative; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.844
SRU_1293
Hemin ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 0.797
SRU_2727
Outer membrane receptor for transport of vitamin B, putative; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  
 0.602
SRU_2733
Hypothetical protein; Identified by Glimmer2; putative.
       0.594
SRU_1224
Hemin ABC transporter, permease protein, putative; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.566
SRU_2730
Aminopeptidase; Identified by match to protein family HMM PF00595; match to protein family HMM PF01546; match to protein family HMM PF04389; match to protein family HMM PF05450.
       0.479
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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