STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2765X-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF00326; match to protein family HMM PF00930. (939 aa)    
Predicted Functional Partners:
SRU_2821
X-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF05960.
    0.735
SRU_2235
MdsD protein, putative; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.649
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
       0.547
SRU_0298
Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.
  
     0.516
SRU_2764
Helicase conserved C-terminal domain protein; Identified by match to protein family HMM PF00271.
       0.500
SRU_2034
Acyl-peptide hydrolase, putative; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.
  
     0.493
SRU_2448
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
  
     0.489
SRU_0446
Conserved hypothetical protein.
  
     0.476
SRU_2401
Acylaminoacyl-peptidase; Identified by match to protein family HMM PF00326; match to protein family HMM PF07676.
  
     0.475
SRU_0702
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.457
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.