STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2813Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409. (389 aa)    
Predicted Functional Partners:
SRU_0370
Conserved hypothetical protein.
     0.964
SRU_0075
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.627
SRU_0367
Conserved hypothetical protein.
  
     0.615
SRU_2812
Chitinase A1 precursor; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
       0.609
SRU_2322
DNA-binding response regulator/sensor histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.600
SRU_0366
Putative outer membrane protein, probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.557
SRU_2534
Probable oxidoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM TIGR01409.
  
     0.509
SRU_0358
Outer membrane protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.496
SRU_2533
Probable secreted glycosyl hydrolase; Identified by match to protein family HMM PF06439.
  
     0.476
SRU_2529
GMC oxidoreductase family; Identified by match to protein family HMM PF00732.
  
     0.472
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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