STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRU_2844Beta-glucanase precursor; Identified by match to protein family HMM PF00722; match to protein family HMM PF00801. (371 aa)    
Predicted Functional Partners:
xloA
Xylosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
 0.773
SRU_2409
Glycosyl hydrolase, family 13, putative; Identified by match to protein family HMM PF00128; Belongs to the glycosyl hydrolase 13 family.
  
   
 0.676
SRU_2842
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
 
     0.634
SRU_2843
Hypothetical protein; Identified by Glimmer2; putative.
       0.603
SRU_2812
Chitinase A1 precursor; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
  
    0.581
susB
Alpha-glucosidase.
 
     0.530
chb
beta-N-acetylhexosaminidase; Identified by match to protein family HMM PF00728; match to protein family HMM PF03174.
 
     0.512
SRU_2841
Putative outer membrane protein, probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.490
SRU_2308
Alpha-amylase, putative; Identified by match to protein family HMM PF00128.
  
   
 0.442
SRU_0359
Outer membrane protein; Identified by match to protein family HMM PF07980.
  
     0.429
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.