STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xloAXylosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915. (866 aa)    
Predicted Functional Partners:
susB
Alpha-glucosidase.
  
 0.954
SRU_2844
Beta-glucanase precursor; Identified by match to protein family HMM PF00722; match to protein family HMM PF00801.
  
 0.773
SRU_2846
Sugar transporter subfamily; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
   
 0.635
SRU_1076
Protein of unknown function (DUF1343) superfamily; Identified by match to protein family HMM PF07075.
  
 0.591
SRU_2842
Putative outer membrane protein probably involved in nutrient binding; Identified by match to protein family HMM PF07980.
  
 0.489
SRU_2841
Putative outer membrane protein, probably involved in nutrient binding; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
     0.442
rbsR-2
Ribose operon repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
     0.438
SRU_0373
N-acetylglucosamine kinase, putative; Identified by match to protein family HMM PF01869.
 
    0.435
SRU_0980
Xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.411
Your Current Organism:
Salinibacter ruber
NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.