STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ10964.1Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)    
Predicted Functional Partners:
OKZ10963.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.995
OKZ10965.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.911
OKZ11265.1
Xanthan lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.625
rlmN
23S rRNA (adenine(2503)-C(2))-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.617
OKZ05521.1
Xanthan lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.617
OKZ10959.1
Nucleoside-diphosphate-sugar pyrophosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.581
OKZ10961.1
DUF4837 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.540
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase PdxA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family.
       0.530
OKZ10957.1
CDP-alcohol phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.514
OKZ10958.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.502
Your Current Organism:
Bacteroides plebeius
NCBI taxonomy Id: 310297
Other names: B. plebeius, Bacteroides plebeius Kitahara et al. 2005, DSM 17135, JCM 12973, strain M12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.