STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ10364.1SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (987 aa)    
Predicted Functional Partners:
OKZ10149.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.936
OKZ12545.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.820
OKZ12870.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.789
OKZ10724.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
OKZ12606.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.703
OKZ10376.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.693
OKZ06072.1
RagB/SusD family nutrient uptake outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.671
OKZ12154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
   0.656
OKZ11942.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.639
OKZ08391.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.628
Your Current Organism:
Bacteroides plebeius
NCBI taxonomy Id: 310297
Other names: B. plebeius, Bacteroides plebeius Kitahara et al. 2005, DSM 17135, JCM 12973, strain M12
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.