STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKZ09849.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)    
Predicted Functional Partners:
OKZ09848.1
Nif3-like dinuclear metal center hexameric protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.924
OKZ12425.1
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
bamA
Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
yidC
Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.652
OKZ10222.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
OKZ09936.1
RNA polymerase Rpb6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.609
OKZ12786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.602
OKZ11446.1
META domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.602
rpoN
RNA polymerase sigma-54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.592
OKZ12914.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.571
Your Current Organism:
Bacteroides plebeius
NCBI taxonomy Id: 310297
Other names: B. plebeius, Bacteroides plebeius Kitahara et al. 2005, DSM 17135, JCM 12973, strain M12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.