Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
irf2bp1Interferon regulatory factor 2 binding protein 1. (583 aa)    
Predicted Functional Partners:
irf2
Interferon regulatory factor.
    
 
 0.795
vgll4
Vestigial-like family member 4b.
    
 
 0.656
LOC101061775
Vestigial like family member 4.
    
 
 0.656
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
    
 
 0.586
AXL
AXL receptor tyrosine kinase.
      
 0.581
fosl2
Fos-like antigen 2.
    
   0.538
Ccdc9
Coiled-coil domain-containing protein 9 isoform X1.
   
  
 0.521
LOC101079931
Junction plakoglobin a.
    
 
 0.512
LOC101076886
Forkhead box A3.
      
 0.453
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.448
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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