Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
usp25Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family. (1019 aa)    
Predicted Functional Partners:
ENSTRUP00000070805
Transcriptional regulator Myc-like isoform X1.
    
 0.896
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.886
rps27a
Ribosomal protein S27a.
   
 0.786
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.779
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.731
LOC101079255
Protein L-Myc-1b-like.
    
 0.712
LOC101072742
Myelocytomatosis oncogene homolog.
    
 0.712
CLSPN
Claspin.
    
 0.706
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.683
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
   
 0.683
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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