STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077976AFG3-like AAA ATPase 2; Belongs to the AAA ATPase family. (801 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.889
phb2
Prohibitin.
   
 0.886
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.831
timmdc1
Uncharacterized protein.
    
 
 0.805
ndufa13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.800
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.780
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
  
 0.775
oma1
OMA1 zinc metallopeptidase.
  
 0.766
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.749
mrpl32
Mitochondrial ribosomal protein L32.
  
 0.737
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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