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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2RLT0_TAKRUTetratricopeptide repeat domain 21B. (1298 aa)    
Predicted Functional Partners:
IFT43
Intraflagellar transport 43.
    
 0.967
IFT122
Intraflagellar transport 122.
   
 0.957
wdr35
WD repeat-containing protein 35.
   
 0.953
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
  
 0.949
wdr19
WD repeat domain 19.
   
 0.942
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.782
ift88
Intraflagellar transport 88 homolog.
   
 
 0.757
dync2li1
Dynein, cytoplasmic 2, light intermediate chain 1.
   
 
 0.732
ift172
Uncharacterized protein.
   
 
 0.730
Ift46
Intraflagellar transport protein 46 homolog isoform X1.
    
 0.724
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.