Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
matn4Matrilin 4. (692 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 0.786
LOC101078322
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 0.615
LOC101061571
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
   
 0.615
MFAP2
Microfibril associated protein 2.
   
 0.553
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.521
LOC105416726
Microfibril associated protein 5.
   
 
 0.509
ENSTRUP00000066035
Elastin-like isoform X1.
   
 0.506
fam20c1
FAM20C1.
    
  0.488
fam20c2
FAM20C2.
    
  0.488
fgl2
Fibrinogen-like 2a.
    
 0.461
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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