STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2RM54_TAKRUVitellogenin domain-containing protein. (726 aa)    
Predicted Functional Partners:
apoA-IV4
Apolipoprotein A-IV4.
   
 0.978
apoa-iv3
Uncharacterized protein.
   
 0.978
mttp
Microsomal triglyceride transfer protein.
   
 0.952
apoa-i
Uncharacterized protein.
   
 0.945
apoe2
Apolipoprotein E2.
   
 0.938
apoe1
Uncharacterized protein.
   
 0.891
cetp
Cholesteryl ester transfer protein.
   
 
 0.874
vldlr
Very low density lipoprotein receptor.
    
 0.810
plg
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 0.775
scarb1
Scavenger receptor class B, member 1; Belongs to the CD36 family.
    
 0.772
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.