Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPL5Ribosomal protein L5b. (343 aa)    
Predicted Functional Partners:
rpl30
Ribosomal protein L30.
   
 0.998
rpl35a
Ribosomal protein L35a.
   
 0.997
rpl21
Ribosomal protein L21.
   
 0.997
rpl31
Ribosomal protein L31.
   
 0.997
rpl4
Ribosomal protein L4.
  
 0.997
rpl15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 0.997
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.997
rpl9
Ribosomal protein L9.
  
 0.997
rpl8
Ribosomal protein L8.
  
 0.997
rpl28
Ribosomal protein L28.
   
 0.997
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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