STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101066261Cathepsin K; Belongs to the peptidase C1 family. (331 aa)    
Predicted Functional Partners:
LOC101080086
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
  
 0.821
sp7
Sp7 transcription factor.
    
 
 0.780
LOC101075537
Baculoviral IAP repeat containing 2.
     
 0.734
mmp9
Uncharacterized protein.
   
 0.701
ctsd2
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.694
CTSD1
Cathepsin D1; Belongs to the peptidase A1 family.
   
 0.690
mmpf1
Matrix metalloproteinase.
   
 
 0.664
lgmn
Legumain.
   
 
 0.659
LOC101076659
Cathepsin Ba; Belongs to the peptidase C1 family.
  
0.659
LOC101070919
Cathepsin Bb; Belongs to the peptidase C1 family.
  
0.658
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.