STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101079931Junction plakoglobin a. (756 aa)    
Predicted Functional Partners:
LOC101064287
Desmoglein 4; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.988
ctnnb1
Catenin (cadherin-associated protein), beta 1.
  
0.986
pkp2
Plakophilin 2.
   
 0.981
PKP1
Plakophilin 1.
   
 0.977
DSC1
Desmocollin 2 like; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.940
LOC101070964
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.920
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.914
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.914
apc
APC regulator of WNT signaling pathway.
   
 0.907
LOC101062949
Adenomatous polyposis coli protein 2-like isoform X1.
   
 0.907
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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