STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nrbf2Nuclear receptor binding factor 2b. (285 aa)    
Predicted Functional Partners:
atg14
Autophagy related 14.
    
 0.992
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.991
becn1
Beclin 1.
    
 0.984
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
    
 
 0.939
rb1cc1
RB1-inducible coiled-coil 1.
    
 
 0.897
dpcd
Deleted in primary ciliary dyskinesia homolog (mouse).
      
 0.604
rpl9
Ribosomal protein L9.
     
  0.551
mfsd3
Major facilitator superfamily domain-containing protein 3.
      
 0.551
hectd1
HECT domain containing 1.
    
   0.542
ncor2
Nuclear receptor corepressor 2.
     
 0.539
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.