STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2RMX1_TAKRURRM domain-containing protein. (98 aa)    
Predicted Functional Partners:
hnrnpc
RRM domain-containing protein.
   
 
 0.698
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
    
 
 0.506
fah
Fumarylacetoacetase.
    
 
 0.497
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
    
 
 0.459
psmd10
Proteasome 26S subunit, non-ATPase 10.
    
 
 0.451
ptbp1
Polypyrimidine tract binding protein 1a.
   
 
 0.422
PTBP3
Polypyrimidine tract binding protein 3.
   
 
 0.422
wdr77
WD_REPEATS_REGION domain-containing protein.
   
 
 0.418
ENSTRUP00000081645
annotation not available
   
 
 0.418
LOC101062685
Notch receptor 1a.
    
   0.417
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.