Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101068977One cut domain family member. (453 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
      
 0.495
hnf1b
HNF1 homeobox Ba.
     
 0.491
orc3
Origin recognition complex, subunit 3.
    
   0.485
lhx1
LIM homeobox 1a.
   
 
 0.482
ENSTRUP00000053907
Neurogenin 3.
   
 0.481
VSX2
Visual system homeobox 2.
      
 0.459
neurod1
Neurogenic differentiation factor.
   
 
 0.432
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
   0.423
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.