Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gcc1GRIP and coiled-coil domain containing 1. (765 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 0.965
tsr1
TSR1 ribosome maturation factor.
   
 0.939
LOC101063739
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.939
ltv1
LTV1 ribosome biogenesis factor.
   
 0.924
riok2
RIO kinase 2 (yeast).
   
 0.923
riok1
RIO kinase 1 (yeast).
   
 0.906
aatf
Apoptosis antagonizing transcription factor.
   
 
 0.905
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.900
heatr1
BP28CT domain-containing protein.
   
 
 0.898
GCC2
GRIP domain-containing protein.
     
0.896
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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