STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101076920Uncharacterized protein. (796 aa)    
Predicted Functional Partners:
WDR37
WD repeat domain 37.
    
 
 0.863
LOC101078020
WD repeat domain 37.
    
 
 0.863
H2SK46_TAKRU
FOP_dimer domain-containing protein.
    
   0.855
snx24
Sorting nexin 24.
    
   0.555
gga3
Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.
    
 
 0.552
LOC101080215
Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.
    
 
 0.552
tmem33
Transmembrane protein 33.
      
 0.500
mrpl38
Mitochondrial ribosomal protein L38.
      
 0.493
ENSTRUP00000055918
Uncharacterized protein.
      
 0.477
gmppa
GDP-mannose pyrophosphorylase Ab.
      
 0.476
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.