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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrsam1Leucine rich repeat and sterile alpha motif containing 1. (730 aa)    
Predicted Functional Partners:
LOC101063939
Serine/threonine kinase 24.
   
 
 0.791
stk25
Serine/threonine kinase 25b.
   
 
 0.791
LOC101069828
Serine/threonine kinase 24b (STE20 homolog, yeast).
   
 
 0.791
LOC101074750
Serine/threonine protein kinase 26.
   
 
 0.791
LOC101068384
Tumor susceptibility gene 101 protein-like.
    
 
 0.699
LOC101079670
Tumor susceptibility 101a.
    
 
 0.699
LOC101070221
Calcium binding protein 39, like 1.
    
 
 0.607
cab39l
Calcium binding protein 39-like.
    
 
 0.607
cab39
Calcium binding protein 39.
    
 
 0.607
calcoco2
SKICH domain-containing protein.
    
 0.605
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.