dnttip2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dnttip2

Fcf2 domain-containing protein. (433 aa)

Predicted Functional Partners:

utp11

0.990

mphosph10

0.987

utp3

0.986

utp6

0.983

fcf1

0.983

ngdn

0.983

wdr46

0.976

rsl1d1

0.976

imp4

0.975

LOC101072761

0.975

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101072761	dnttip2	ENSTRUP00000036497	ENSTRUP00000001763	UTP14C small subunit processome component.	Fcf2 domain-containing protein.	0.975
LOC101072761	fcf1	ENSTRUP00000036497	ENSTRUP00000039481	UTP14C small subunit processome component.	FCF1 rRNA-processing protein.	0.997
LOC101072761	imp4	ENSTRUP00000036497	ENSTRUP00000008898	UTP14C small subunit processome component.	IMP U3 small nucleolar ribonucleoprotein 4.	0.988
LOC101072761	mphosph10	ENSTRUP00000036497	ENSTRUP00000082353	UTP14C small subunit processome component.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.990
LOC101072761	ngdn	ENSTRUP00000036497	ENSTRUP00000048355	UTP14C small subunit processome component.	Neuroguidin, EIF4E binding protein.	0.991
LOC101072761	rsl1d1	ENSTRUP00000036497	ENSTRUP00000043461	UTP14C small subunit processome component.	Ribosomal L1 domain containing 1.	0.980
LOC101072761	utp11	ENSTRUP00000036497	ENSTRUP00000023571	UTP14C small subunit processome component.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
LOC101072761	utp3	ENSTRUP00000036497	ENSTRUP00000037285	UTP14C small subunit processome component.	UTP3 small subunit processome component.	0.999
LOC101072761	utp6	ENSTRUP00000036497	ENSTRUP00000030381	UTP14C small subunit processome component.	UTP6 small subunit processome component.	0.984
LOC101072761	wdr46	ENSTRUP00000036497	ENSTRUP00000029652	UTP14C small subunit processome component.	WD repeat domain 46.	0.998
dnttip2	LOC101072761	ENSTRUP00000001763	ENSTRUP00000036497	Fcf2 domain-containing protein.	UTP14C small subunit processome component.	0.975
dnttip2	fcf1	ENSTRUP00000001763	ENSTRUP00000039481	Fcf2 domain-containing protein.	FCF1 rRNA-processing protein.	0.983
dnttip2	imp4	ENSTRUP00000001763	ENSTRUP00000008898	Fcf2 domain-containing protein.	IMP U3 small nucleolar ribonucleoprotein 4.	0.975
dnttip2	mphosph10	ENSTRUP00000001763	ENSTRUP00000082353	Fcf2 domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.987
dnttip2	ngdn	ENSTRUP00000001763	ENSTRUP00000048355	Fcf2 domain-containing protein.	Neuroguidin, EIF4E binding protein.	0.983
dnttip2	rsl1d1	ENSTRUP00000001763	ENSTRUP00000043461	Fcf2 domain-containing protein.	Ribosomal L1 domain containing 1.	0.976
dnttip2	utp11	ENSTRUP00000001763	ENSTRUP00000023571	Fcf2 domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.990
dnttip2	utp3	ENSTRUP00000001763	ENSTRUP00000037285	Fcf2 domain-containing protein.	UTP3 small subunit processome component.	0.986
dnttip2	utp6	ENSTRUP00000001763	ENSTRUP00000030381	Fcf2 domain-containing protein.	UTP6 small subunit processome component.	0.983
dnttip2	wdr46	ENSTRUP00000001763	ENSTRUP00000029652	Fcf2 domain-containing protein.	WD repeat domain 46.	0.976