STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078583Si:ch211-194m7.4. (460 aa)    
Predicted Functional Partners:
chga
Chromogranin A.
      
 0.821
lrig1
Leucine-rich repeats and immunoglobulin-like domains 1.
    
 
 0.771
mex3a
RING-type domain-containing protein.
    
 
 0.718
nog
Noggin; Inhibitor of bone morphogenetic proteins (BMP) signaling.
      
 0.704
dclk1
Doublecortin-like kinase 1b.
      
 0.672
lgr4
Leucine-rich repeat containing G protein-coupled receptor 4.
    
 
 0.637
lgr5
Leucine-rich repeat-containing G protein-coupled receptor 5.
    
 
 0.637
bmi1
Bmi1 polycomb ring finger oncogene 1a.
      
 0.602
PCGF2
Polycomb group ring finger 2.
      
 0.602
agr2
Anterior gradient 2.
   
  
 0.570
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.