STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itgavIntegrin, alpha V; Belongs to the integrin alpha chain family. (1043 aa)    
Predicted Functional Partners:
LOC101075584
Integrin beta; Belongs to the integrin beta chain family.
   
 0.981
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.981
LOC101063214
Vitronectin a.
   
 0.976
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.970
LOC101063812
Vitronectin b.
   
 0.970
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.963
LOC101068097
Tenascin C.
    
 0.960
LOC101061998
Fibronectin 1a.
    
 0.959
tnr
Tenascin R (restrictin, janusin).
    
 0.953
LOC101062487
Thrombospondin 1b.
   
 0.950
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.